Unnatural instinct and Dead Reckoning

On my Scion, I want to stick the dead reckoning jewel on the jewel slot right to the left of my starting place on the passive tree; it has exactly 40 int. within range. The jewel slot right to the right of my starting spot is practically
Begging for an unnatural instinct jewel. However, getting to that jewel slot, depending on how I do that, might nullify 5 int. That dead reckoning requires to function.

When Unnatural Instinct nullifies a passive, does that passive still count towards another jewel’s ‘X stats within range’, or no?